serialSaveDataHDF5.h

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#ifndef SERIALSAVEDATAHDF5_H
#define SERIALSAVEDATAHDF5_H

#include <string>
#include <iostream>
#include <cstdio>
#include <cstdlib>
#include <cstring>
#include <utility>
#include "hdf5.h"
#include "simData.h"
#include "saveData.h"
#include "serialEnv.h"

using namespace std;

#include "hdf5.h"

class SerialSaveDataHDF5 : public SaveData
{

  public:

    SerialEnv * env;    
    string filename;    
    hid_t file = 0;     
    int file_iteration = 0; 

    enum OutputDetail {
      OUTPUT_ALL,       
      OUTPUT_REDUCED,   
      OUTPUT_MINIMAL    
    } detail;

    void saveCons() override;

    void savePrims() override;

    void saveAux() override;

    void saveDomain() override;

    void saveConsts() override;


    SerialSaveDataHDF5(
            Data * data, SerialEnv * env, string filename="data", OutputDetail detail=OUTPUT_ALL
    ) : SaveData(data, 0), env(env), filename(filename), detail(detail) {
      // Remove any pre-existing checkpoint file
      std::remove((filename+".checkpoint.hdf5").c_str());
    }

    virtual ~SerialSaveDataHDF5() { }     


    void saveAll(bool timeSeries=false) override;


    void saveVar(string variable, int num=1) override;


    void openFile(const char *name);


    void openCheckpointFile();


    void writeDataSetDouble(const hid_t *group, const char *name, const int *var, const double *data);
};

#endif